bpRNA: RNA Secondary Structure Database

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This RNA has a Pseudoknot warning!

This RNA has hairpin loop(s) of length zero!

PDF , JPG, Color-coded Segments

Color-coded Structures

Color-coded Page Numbers (Linear Graph)

Fasta File BPSeq File Dot Bracket File Ct File Structure Types File Structure Array File

Bulges

Bulge	Start Position	Stop Position	5p BasePair	3p BasePair	is PK	Sequence	Length

Hairpin	Start Position	Stop Position	BasePair	is PK	Sequence	Length

Multiloop	Multiloop Branch	Start Position	Stop Position	5p BasePair	3p BasePair	is PK	Sequence	Length

Internal Loop	Internal Loop Branch	Base Pair	Start Position	Stop Position	is PK	Sequence	Length

Pseudoknot	NO. Base Pairs	5p Start Position	5p Stop Position	3p Start Position	3p Stop Position	Loop Type 1	Loop 1	Loop Type 2	Loop 2

Pseudoknots Base Pairs

Pseudoknot Base Pair	Pseudoknot	5p Position	5p Nucleotide	3p Position	3p Nucleotide

Exterior Region	Start Position	Stop Position	Type	is PK	Sequence	Length

Stems

Stem	5p Start Position	5p Stop Position	5p Sequence	5p Length	3p Start Position	3p Stop Position	3p Sequence	3p Length

Segment	NO.Base Pairs	5p Start Position	5p Stop Position	5p Sequence	5p Length	3p Start Position	3p Stop Position	3p Sequence	3p Length